Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs141105578 chr5:168978164 G/A 1.46E-8 509 22.12 23.85 6.83 KM Plot
LGG rs141324824 chr5:169050837 G/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs14178 chr16:67969531 A/G 2.44E-12 507 21.6 31.63 6.47 KM Plot
LGG rs142169051 chr3:153666250 C/CA 0 494 22.57 21.42 0.23 KM Plot
LGG rs142249920 chr7:45817627 T/C 7.36E-5 500 24.23 19.23 25.33 KM Plot
LGG rs1422814 chr5:169057741 C/T 1.73E-8 503 21.87 24.07 6.83 KM Plot
LGG rs142324836 chr22:43094945 GCAACGT/ACAACGT 5.36E-6 496 23.53 20.27 13.63 KM Plot
LGG rs142327762 chr5:142707149 A/T 5.16E-10 491 21.68 25.27 6.15 KM Plot
LGG rs142400275 chr14:24422016 A/C 4.08E-5 508 23.58 21 15.53 KM Plot
LGG rs142587065 chr8:6186696 G/A 2.32E-5 498 21.83 24.03 7.72 KM Plot
LGG rs142679588 chr1:22129610 A/G 1.59E-6 504 21.7 26.27 14.6 KM Plot
LGG rs142876424 chr3:153715813 A/T 0 497 22.6 23.63 0.23 KM Plot
LGG rs1429144 chr6:53176537 C/T 2.82E-5 509 22.6 21.6 14.8 KM Plot
LGG rs143436442 chr5:168986237 C/CT 1.52E-8 508 22.37 23.85 6.83 KM Plot
LGG rs143501397 chr1:22128243 C/T 1.59E-6 504 21.7 26.27 14.6 KM Plot